PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_25680V3.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 356aa    MW: 39268.9 Da    PI: 7.8717
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_25680V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06728325
                       S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                       ++lC+ff+  G C  G  C+F+H
  Pp3c5_25680V3.1.p  7 RVLCKFFMH-GACLKGVDCQFSH 28
                       78***8888.************* PP

2zf-CCCH24.44.9e-083757526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        C f++r G C+yG+rC++ H+
  Pp3c5_25680V3.1.p 37 VCTFYQR-GLCSYGARCRYEHV 57
                       69*9999.***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.723431IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5530IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6529IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4932IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-53258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7653259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-53356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-43656IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-53757IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878137164IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.3E-10190268IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.24E-10192270No hitNo description
CDDcd001625.18E-4205267No hitNo description
SMARTSM001843.0E-6206263IPR001841Zinc finger, RING-type
PfamPF000973.4E-5206263IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008911.634206264IPR001841Zinc finger, RING-type
PROSITE patternPS005180230239IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.859293322IPR000571Zinc finger, CCCH-type
SMARTSM003560.1293321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMEGRSRVLC KFFMHGACLK GVDCQFSHNW SDQSSQVCTF YQRGLCSYGA RCRYEHVKVS  60
RLTQPLATPV PVPRHLPAAI SLTSTVDSSS RATVIAKPSL AHLKDAWQQN STESLANGVS  120
AISLGEADEP EALSNDPSDR PICAFAAAGN CPLGESCRNI HGDLCTTCGK HCLHPYRPLD  180
RENHKIQCER NKKNLEALLK SQDIECSICL ERVLSKPTVA ERKFGLMSGC DHPFCVGCIR  240
GWRSGSHAPG MDIDTVVRAC PVCRVPTHYV VPSVVWYFSP EEKEEIINGY KNKLGEVDCR  300
HFDYGNGTCP FGTSCFYKHA FKDGTLEEVK LRHLGAADGN TVIVKNVRLS DFLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.184850.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001772740.10.0predicted protein, partial
SwissprotQ5ZA071e-147C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA9T2C70.0A9T2C7_PHYPA; Predicted protein (Fragment)
STRINGPP1S154_11V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-133C3H family protein